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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66718270_66719640_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66718270 - 66719640
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACCA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTCCTTTTAAG
Flanking Amino Acid:
KQEELLKNIQNAHQDFSKMK
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
56.4
42.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.5
0.73
0.9
87.3
23.7
Minor 5ss
36.7
-1.5
3.2
49.5
46.2
Minor BPS
55
0.01
1.8
66.22
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754