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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66719890_66720721_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66719890 - 66720721
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AACTCATTAACT
Flanking Amino Acid:
NPAKTLQGSEVVNVLRTLLA
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
0.9
74.2
35.2
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
70.3
0.71
1.6
81.19
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754