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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66721765_66722231_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66721765 - 66722231
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
TTAACTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ACACTTTTAACT
Flanking Amino Acid:
LQRNKEILDESLRLLDEEET
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.4
35.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.8
0.67
0.9
73.7
36.5
Minor 5ss
45.8
-0.4
2.7
57.2
41.4
Minor BPS
64.8
0.54
1.2
72.06
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754