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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66724213_66728715_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66724213 - 66728715
Intron Length:
4503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATTTTAACT
Flanking Amino Acid:
QCQYKDTLPKHAADLIKTVA
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
74.4
0.84
1.2
85.12
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238