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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66728817_66732047_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
66728817 - 66732047
Intron Length:
3231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTCCAACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCTCCAACC
Flanking Amino Acid:
QEVFFLKATRDKMKDGIIAK
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.2
37.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.8
0.42
0.9
59.3
35.8
Minor 5ss
63.5
0.46
2.4
76
40.1
Minor BPS
56.2
0.17
1.9
71.2
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754
ENSAPLT00000043314
66713106 - 66746343
33238