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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6676602_6678474_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6676602 - 6678474
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAGA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.2
0.57
1
73.7
40.5
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
78.3
0.88
1.5
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921