Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6681710_6682475_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6681710 - 6682475

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

GTTTCCAAAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

83.9

30.3

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

78.3

0.64

69.2

46.1

Minor 5ss

39.3

-1.2

3.3

57.3

47.4

Minor BPS

61.4

0.35

77.37

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003614

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003825

6670886 - 6711806

40921