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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6685624_6687203_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6685624 - 6687203
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTTCTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.3
42.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
87.4
0.84
0.8
82.4
34
Minor 5ss
36.5
-1.5
3.2
48.3
47.3
Minor BPS
55.9
0.18
1.9
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921