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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66866233_66912715_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66866233 - 66912715
Intron Length:
46483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTTCTCCACA
Flanking Amino Acid:
MNLMARALYDN
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
55.1
0.15
2
70.77
41.8

Associated Gene:

Gene:
NEDD9
Ensembl Gene ID:
ENSAPLG00000001295
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001333
66866025 - 66934276
68252