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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6688920_6691936_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6688920 - 6691936
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.9
0.61
0.9
69.1
40.6
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
64.6
0.54
1.6
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921