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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66913157_66928175_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66913157 - 66928175
Intron Length:
15019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGCA
5'SS Class:
major
3'SS Sequence:
TTCTAACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTCTTCTAACC
Flanking Amino Acid:
CLDGPPLINKVITPVRSGQG
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.6
36.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.9
0.52
0.9
65.9
34.6
Minor 5ss
31.3
-2.1
3.4
41.7
44.9
Minor BPS
58.1
0.23
1.6
70.61
34.1

Associated Gene:

Gene:
NEDD9
Ensembl Gene ID:
ENSAPLG00000001295
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001333
66866025 - 66934276
68252