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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6692170_6694815_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6692170 - 6694815
Intron Length:
2646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CCTTGTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CATACTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
74.8
0.56
0.8
72.8
32
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
55.5
0.25
1.6
69.39
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921