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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66928278_66929478_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66928278 - 66929478
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ACTTCTATAACC
Flanking Amino Acid:
DIPPVRPLQGVYDIPPTLAK
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.2
0.75
0.7
82
29.2
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
66
0.48
1.6
73.53
37.3

Associated Gene:

Gene:
NEDD9
Ensembl Gene ID:
ENSAPLG00000001295
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001333
66866025 - 66934276
68252