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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66931654_66933183_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66931654 - 66933183
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AACTTTTTATTT
Flanking Amino Acid:
QSKMELEHHQINQFQQLEQE
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.8
81.7
35.4
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
54.1
0.21
1.5
66.33
39.3

Associated Gene:

Gene:
NEDD9
Ensembl Gene ID:
ENSAPLG00000001295
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001333
66866025 - 66934276
68252