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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6694880_6694989_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6694880 - 6694989
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACAA
5'SS Class:
major
3'SS Sequence:
CTGAAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.7
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.1
0.34
1
55
44.5
Minor 5ss
29.9
-2.3
3.3
38.7
46.4
Minor BPS
73
0.8
1.5
90.14
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921