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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66968659_66990841_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66968659 - 66990841
Intron Length:
22183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAATAT
U12 Branch Point Sequence:
TTGTCGTTATAT
Flanking Amino Acid:
MEHLKAFDQEI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
58.7
0.22
1.1
55.4
40
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
50.2
0.09
2.4
77
45.3

Associated Gene:

Gene:
ELOVL2
Ensembl Gene ID:
ENSAPLG00000002641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048299
66968656 - 67013430
44775