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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6700477_6701513_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6700477 - 6701513
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921