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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67013927_67014599_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67013927 - 67014599
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTACTTTTCATT
Flanking Amino Acid:
VILFVNFYIKTYRKAPSRTA
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
53.6
0.19
1.7
73.31
38.2

Associated Gene:

Gene:
ELOVL2
Ensembl Gene ID:
ENSAPLG00000002641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002668
66990890 - 67014725
23836