About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6704186_6706654_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6704186 - 6706654
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.7
0.62
0.9
69.5
40.7
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921