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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67042834_67043658_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67042834 - 67043658
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
CATGCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTAGAAGAAAC
Flanking Amino Acid:
CISAFADMNQVKKPSDEKLE
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.9
0.54
0.9
65
40.9
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
37
-1
2.1
50.67
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040475
67041609 - 67044881
3273