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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67043705_67044036_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67043705 - 67044036
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCATATGAAGT
Flanking Amino Acid:
QLNERLGDDRRVYSFPCISA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.2
0.79
0.8
76.9
37.3
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
45.9
-0.2
2
66.29
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040475
67041609 - 67044881
3273