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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6706729_6706840_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6706729 - 6706840
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTGTATTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84
0.77
0.9
80.6
37
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
61.8
0.37
1.7
72.91
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921