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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6707435_6709572_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6707435 - 6709572
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CACCCTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86.8
0.83
0.7
80.5
31.5
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
56.2
0.19
1.5
59.02
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003614
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003825
6670886 - 6711806
40921