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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67085681_67087166_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67085681 - 67087166
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGCCATGATT
Flanking Amino Acid:
YYLRQSRYLPGVNPKSISLV
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.4
0.62
1
82.8
32.6
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
63.7
0.51
1.7
84.01
37.1

Associated Gene:

Gene:
MAK
Ensembl Gene ID:
ENSAPLG00000003041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025948
67070952 - 67135667
64716
ENSAPLT00000003108
67070952 - 67096011
25060