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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67087299_67089208_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67087299 - 67089208
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTCTCTACA
Flanking Amino Acid:
EGMSFNRNNTEENLIIPIEK
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.6
84
24.2
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
56.1
0.18
1.9
71.06
41

Associated Gene:

Gene:
MAK
Ensembl Gene ID:
ENSAPLG00000003041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003108
67070952 - 67096011
25060