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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67087299_67092250_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67087299 - 67092250
Intron Length:
4952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
CTAATGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTAACTGAAAA
Flanking Amino Acid:
EGMSFNRNNTGNPDFVGGAA
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
64.3
0.32
1
58.3
41.7
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
49.8
-0
1.8
65.07
40

Associated Gene:

Gene:
MAK
Ensembl Gene ID:
ENSAPLG00000003041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025948
67070952 - 67135667
64716