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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67100503_67101901_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67100503 - 67101901
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTGCG
5'SS Class:
major
3'SS Sequence:
TCTCTTTTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTCTCTTTTATC
Flanking Amino Acid:
QDPKNIWLSLVASGTLSAVM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
61
44
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
84.5
0.78
0.8
85
28.1
Minor 5ss
32.1
-2
3.4
41.4
45
Minor BPS
65.6
0.47
1.6
73.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022114
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026262
67100128 - 67102182
2055