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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67107301_67112296_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67107301 - 67112296
Intron Length:
4996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TACCCAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTGTTACCC
Flanking Amino Acid:
HFWVTLNRIPGVPGSMPNAS
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.5
0.46
0.9
62.9
36.9
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
57.1
0.2
2.3
77.35
39.1

Associated Gene:

Gene:
GCNT2
Ensembl Gene ID:
ENSAPLG00000027225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020274
67106182 - 67119184
13003