Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67113666_67118871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

67113666 - 67118871

Intron Length:

5206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTAAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTCTTTTAAAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

84.1

0.77

0.9

86.1

25.6

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

65.1

0.33

1.4

69.62

37.6

Associated Gene:

Gene:

GCNT2

Ensembl Gene ID:

ENSAPLG00000027225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020274

67106182 - 67119184

13003