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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67142234_67149295_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67142234 - 67149295
Intron Length:
7062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGA
5'SS Class:
major
3'SS Sequence:
CCCCACACCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCCATTTTGACA
Flanking Amino Acid:
SILAKMGDWQERHDSTSNGT
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
56.8
0.15
0.8
47
29.1
Minor 5ss
35.7
-1.6
3.3
48
47.5
Minor BPS
50.3
0
1.3
53.37
39.8

Associated Gene:

Gene:
TFAP2A
Ensembl Gene ID:
ENSAPLG00000003330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038023
67142053 - 67159257
17205
ENSAPLT00000034050
67142053 - 67159257
17205