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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67147958_67149295_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67147958 - 67149295
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACACCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCCATTTTGACA
Flanking Amino Acid:
MLVHSFSAMERHDSTSNGT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
56.8
0.15
0.8
47
29.1
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
50.3
0
1.3
53.37
39.8

Associated Gene:

Gene:
TFAP2A
Ensembl Gene ID:
ENSAPLG00000003330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003390
67147931 - 67159257
11327