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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67149731_67152661_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67149731 - 67152661
Intron Length:
2931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
CCTTTCGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CGCGCACTGACA
Flanking Amino Acid:
SIPHAIEDVPHVEDPGINIP
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61
44
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.9
0.72
0.8
76.1
32.4
Minor 5ss
39.6
-1.2
3
53.3
43.4
Minor BPS
42.5
-0.6
2
48.9
41.7

Associated Gene:

Gene:
TFAP2A
Ensembl Gene ID:
ENSAPLG00000003330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003390
67147931 - 67159257
11327
ENSAPLT00000042607
67144663 - 67159257
14595
ENSAPLT00000038023
67142053 - 67159257
17205
ENSAPLT00000034050
67142053 - 67159257
17205
ENSAPLT00000021456
67148122 - 67159257
11136