About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67152714_67153830_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67152714 - 67153830
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CGCTCCTCACCC
Flanking Amino Acid:
NIPDQTVIKKGPVSLSKSNN
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
49.5
-0
1.9
59.01
45.8

Associated Gene:

Gene:
TFAP2A
Ensembl Gene ID:
ENSAPLG00000003330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021456
67148122 - 67159257
11136
ENSAPLT00000003390
67147931 - 67159257
11327
ENSAPLT00000042607
67144663 - 67159257
14595
ENSAPLT00000038023
67142053 - 67159257
17205
ENSAPLT00000034050
67142053 - 67159257
17205