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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67154063_67154890_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67154063 - 67154890
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCGTGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACC
Flanking Amino Acid:
NASLLGGVLRRAKSKNGGRS
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
67.5
0.39
1.1
61.1
44.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
63.9
0.41
1.6
74.1
37

Associated Gene:

Gene:
TFAP2A
Ensembl Gene ID:
ENSAPLG00000003330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038023
67142053 - 67159257
17205
ENSAPLT00000034050
67142053 - 67159257
17205
ENSAPLT00000021456
67148122 - 67159257
11136
ENSAPLT00000003390
67147931 - 67159257
11327
ENSAPLT00000042607
67144663 - 67159257
14595