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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67297196_67346211_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67297196 - 67346211
Intron Length:
49016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
AAATTCAGATGT
Flanking Amino Acid:
ALKEAINLSGGGSVFSCGSE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
74.1
0.6
1
69
38.9
Major PPT
84.2
0.77
0.8
80.6
31.5
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
39.5
-0.7
2
54.21
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003406
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045541
67296801 - 67391802
95002