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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67405866_67407729_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67405866 - 67407729
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTTTCCTTAATA
Flanking Amino Acid:
DHWLCNLYFQMIKLPQDSDK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
80.6
0.69
0.8
78
29.3
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
93.3
1.36
0.6
95.44
19.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697