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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67407869_67412475_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67407869 - 67412475
Intron Length:
4607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGATT
5'SS Class:
major
3'SS Sequence:
ATTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTCTTCTACA
Flanking Amino Acid:
SEKVKCHGPQGQPLTSLKDP
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
80.5
33.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84
0.76
0.8
78.1
29.9
Minor 5ss
32.8
-2
3.3
48.4
47.4
Minor BPS
57.6
0.23
1.9
72.47
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697