About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67412638_67421137_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67412638 - 67421137
Intron Length:
8500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGACT
5'SS Class:
major
3'SS Sequence:
TTTTCTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCTATTACA
Flanking Amino Acid:
KMEELKMLPAENDFYQDCSG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.3
37.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
90
0.9
0.7
84.9
28.3
Minor 5ss
31.3
-2.1
3
41.7
44.5
Minor BPS
62.6
0.39
1.9
80.4
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697