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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67421227_67424944_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67421227 - 67424944
Intron Length:
3718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGCT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAAG
Flanking Amino Acid:
LKEEQGIRHKINWNNPPEQY
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
63.5
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
1
79.2
32
Minor 5ss
30.9
-2.2
3.7
48.2
47.4
Minor BPS
58.9
0.14
1.7
67.39
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697