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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67460914_67465485_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67460914 - 67465485
Intron Length:
4572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCATGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTCCCTCATG
Flanking Amino Acid:
AVLVVDSFLGRLVNSVEKPI
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
69.3
0.43
1
65.4
34.7
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
56.9
0.07
2.1
71.93
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697