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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67465650_67470702_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67465650 - 67470702
Intron Length:
5053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AAGTATGTAATT
Flanking Amino Acid:
SSAVLYLYFLRLHNEGWLLD
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82.9
0.74
0.7
81.5
30.5
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
46.9
-0.1
2.1
64.06
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697