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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67502964_67511761_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67502964 - 67511761
Intron Length:
8798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GCCATAATAATT
Flanking Amino Acid:
LRLPDGAIVEAFGDITGISL
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
71.6
40.2
Major BPS
80
0.75
1
78.6
31
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
33.1
-1.9
3.1
41.9
44.7
Minor BPS
43.5
-0.4
1.8
54.96
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020556
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030813
67405635 - 67514331
108697