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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6752233_6756641_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6752233 - 6756641
Intron Length:
4409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
ACACTTGTGTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TACTTGTTGACC
Flanking Amino Acid:
ELIPEPDSITVVDFHTEPLI
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
51.5
0.03
1.2
56.1
43
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
52.7
0.07
2.1
65.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402