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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6758587_6759769_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6758587 - 6759769
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACCG
Flanking Amino Acid:
CPDCKVCQNCKHSGEDNKML
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.9
73.5
41.9
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
57.8
0.11
2
71.76
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402