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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6759942_6764308_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6759942 - 6764308
Intron Length:
4367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCAAATGAAAT
Flanking Amino Acid:
PDHIDQAPERSKEEANCAVC
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
80
0.75
1
78.6
31
Major PPT
79.3
0.66
0.8
73.9
36.4
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
45
-0.3
2
65.8
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402