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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6764472_6788506_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6764472 - 6788506
Intron Length:
24035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTGTGTTTATTT
Flanking Amino Acid:
DKAVVSGSTERCAYCKHLGA
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.4
0.84
0.8
84.8
35.4
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
49.1
0.01
2
67.82
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022389
6751400 - 6863801
112402