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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67730471_67731624_F

Intron Information:

Intron Rank:
141063
Intron Class:
major
Intron Phase:
Intron Coordinates:
67730471 - 67731624
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TATATCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.2
0.75
0.9
76.7
37
Minor 5ss
37.3
-1.4
2.7
48.1
41.6
Minor BPS
62.8
0.4
1.7
72.94
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025995
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044131
67730102 - 67732406
2305