Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67743903_67756027_R

Intron Information:

Intron Rank:

129106

Intron Class:

major

Intron Phase:

Intron Coordinates:

67743903 - 67756027

Intron Length:

12125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

ATTTTTTCCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.4

34.2

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

0.99

0.5

88.9

28.2

Minor 5ss

30.2

-2.3

3.7

45.9

49.3

Minor BPS

49.4

0.04

1.9

73.56

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019388

67743665 - 67756825

13161