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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67856550_67857071_R

Intron Information:

Intron Rank:
150466
Intron Class:
major
Intron Phase:
Intron Coordinates:
67856550 - 67857071
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.8
0.85
0.8
85.9
33.1
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
56.6
0.29
1.8
77.46
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028449
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028894
67856232 - 67869771
13540
ENSAPLT00000018375
67856232 - 67872016
15785
ENSAPLT00000042227
67856232 - 67869484
13253
ENSAPLT00000031610
67856232 - 67869484
13253