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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_67857161_67862327_R

Intron Information:

Intron Rank:
150467
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
67857161 - 67862327
Intron Length:
5167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTAACTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATTCCTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
52.9
0.07
1.7
63.9
41.8
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
59.6
0.28
1.9
70.05
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028449
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031610
67856232 - 67869484
13253
ENSAPLT00000018375
67856232 - 67872016
15785
ENSAPLT00000042227
67856232 - 67869484
13253